rs47633684 SNP Detail

Summary

• ID
  rs47633684
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28393894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAT TATTTTGGTG TGTTGTTAAA
  R
  GGCTCAAGTC TCGCGTACAG GTGGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss148635403	ENSMUSSNP6402876	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss322126002	CHEV_7_29479488	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47633684					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28393894 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18715	CpG island 18715	718 bp distal
Fbxo27	F-box protein 27	within coordinates
Rr644337	regulatory region 644337	1315 bp distal
Rr644338	regulatory region 644338	440 bp distal
Rr644339	regulatory region 644339	324 bp distal
Tssr65494	transcription start site region 65494	1635 bp downstream
Tssr65495	transcription start site region 65495	1599 bp downstream
Tssr65496	transcription start site region 65496	1459 bp downstream
Tssr65497	transcription start site region 65497	1448 bp downstream
Tssr65498	transcription start site region 65498	1426 bp downstream
Tssr65499	transcription start site region 65499	457 bp downstream
Tssr71557	transcription start site region 71557	786 bp downstream