rs47635165 SNP Detail

Summary

• ID
  rs47635165
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45108670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACATGCTC GGTAGTGCCC
  AATACCCCCG CTTCTTACCT GCACATCCTG GAAGAGTGCA CGGCCCCCGC GATCGTTCTG
  AAACTCGAGG AGACGCTCCG CGCCCTCGCG CTTCTCCTCG GCCAATTCGC GGAAGAAGTG
  GCCTACGCCC TCCAGAGCCA CGTCATCCCG ATCAAAAAAG AAGCCCTGCG GGAGGTTACA
  R
  ATACGAGTTA ACGGAACGCG GTGGCTCGGC TCACACTGTA AACTTCAATC GCAACACTCA
  AGAGGTAGAG GCAGTACGTG TGAGATTTCG AGGGCAGCCC GGTCTGCCCA GCGAGTTCCA
  GTCAGACAAA ACTACTATGT ACACAGCGCG CAGGGAGAGG GAGAGGTCGG AGCACAGTCT
  CTGCCCTGCA TGGAACAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss61003435	NES16114258	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs47635165					SNP	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003435	NES16114258	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45108670 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19060	CpG island 19060			within coordinates
Cpgi19061	CpG island 19061			578 bp proximal
Ftl1	ferritin light polypeptide 1			Intron
				Noncoding-Transcript-Variant
Gm10252	predicted gene 10252			223 bp upstream
Gm56125	predicted gene, 56125			1049 bp upstream
Gm73429	predicted gene, 73429			936 bp downstream
Gm73431	predicted gene, 73431			1763 bp upstream
Rr380754	regulatory region 380754			89 bp upstream
Rr646449	regulatory region 646449			1287 bp distal
Rr646450	regulatory region 646450			395 bp proximal
Rr646451	regulatory region 646451			842 bp proximal
Rr646452	regulatory region 646452			1273 bp proximal
Rr646453	regulatory region 646453			1774 bp proximal
Tssr66539	transcription start site region 66539			1160 bp downstream
Tssr66540	transcription start site region 66540			1056 bp downstream
Tssr66541	transcription start site region 66541			415 bp upstream
Tssr66542	transcription start site region 66542			1818 bp upstream
Tssr72390	transcription start site region 72390			1044 bp upstream
Tssr72391	transcription start site region 72391			1022 bp upstream
Tssr72392	transcription start site region 72392			898 bp upstream
Tssr72393	transcription start site region 72393			833 bp upstream
Tssr72394	transcription start site region 72394			687 bp upstream
Tssr72395	transcription start site region 72395			153 bp downstream
Tssr72396	transcription start site region 72396			185 bp downstream
Tssr72397	transcription start site region 72397			442 bp downstream
Tssr72398	transcription start site region 72398			593 bp downstream
Tssr72399	transcription start site region 72399			1676 bp downstream
Tssr72400	transcription start site region 72400			1714 bp downstream