rs47635910 SNP Detail

Summary

• ID
  rs47635910
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:63281509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGTCTGT GAATAGGACC
  AAAACAGGCC CAGCCTGAGG CATTGGGTGG AATTCTCTAC AGCCTTTAAA AGGGCTGAAG
  TAGAGCAAGT GTGGCGGAAG TTCTCAGACA GCGTCCGCCA AGGAAACAAG AGTCCATGTC
  CACTGTGGGG TGGTCCACAT GGACCTGGAA GCCAGTGTCT GTAATGATTC ACAAGACGCT
  W
  GCCACAGCAG TTACCATGGA GAGTGGCCTC GCTCAGGGAA GCACAGACTC CTTTCCATTG
  CTGACTTTCA CATGGAGTCC TGTTGCCACA GGAGTGGTCA CTAAATGATG AGATTCAATG
  AGACATAAGA GCCAAATGCA GATGACATTC TAAAGTAAGC TTCAGAGTTC TAAACCTCAC
  ACTGCTTGAA TTCCAACCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61818489	NES17756656	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47635910					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61818489	NES17756656	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:63281509 () rs orientation: forward

Symbol	Name	Function Class
Aopep	aminopeptidase O	within coordinates
Gm30409	predicted gene, 30409	within coordinates
Rr276922	regulatory region 276922	892 bp proximal
Rr276923	regulatory region 276923	1691 bp proximal
Rr284650	regulatory region 284650	92 bp proximal