rs47636437 SNP Detail

Summary

• ID
  rs47636437
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:7473053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CGTTAAGGAT TTGTACTCTA TGTCAGTATT CAGCTTACAT
  ACAAACTGCA ACATCAAATG AGGGCTGTTT TGCTTCCTAC GAAAACCAGC TTGTATTCTA
  G
  AAATTCCTGT GCAGCTTTTA CATGCGTGAG GGGATGTATG GGTGAAAAAC ATTTTCACCT
  AGTGAAGCAT AAGGCCAATA CCAACATTGT TTTATTTTCG G                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146020468	ENSMUSSNP984083	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs47636437					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:7473053 () rs orientation: forward

Symbol	Name	Function Class
Atl3	atlastin GTPase 3	within coordinates
Cpgi10560	CpG island 10560	613 bp distal
Gm58988	predicted gene, 58988	814 bp upstream
Rr543689	regulatory region 543689	1625 bp distal
Rr543690	regulatory region 543690	1240 bp distal
Rr543691	regulatory region 543691	324 bp distal
Rr543692	regulatory region 543692	746 bp distal
Tssr154754	transcription start site region 154754	1657 bp downstream
Tssr154755	transcription start site region 154755	1620 bp downstream
Tssr154756	transcription start site region 154756	1424 bp downstream
Tssr154757	transcription start site region 154757	1226 bp downstream
Tssr154758	transcription start site region 154758	1214 bp downstream
Tssr154759	transcription start site region 154759	1182 bp downstream
Tssr154760	transcription start site region 154760	1090 bp downstream