rs47637915 SNP Detail

Summary

• ID
  rs47637915
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:73954433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCAACT GGAAACTCGG
  GCGGGATGGG CGGCGACCGG GTCCAGCCAC GCAGCTAAGG AGTAAGCGAG CCTCAGAGAA
  CTCTATAGAG AGCCGGGGCG GTGCGAGCCA GGCTCGGACC CAAGCTTGGC AGCCCACTCG
  CTCCAGCAGC GCCTCCCAAA GCCAGACGCA GCTTTCCATT GAAGGTGCAG AGACCCCCCC
  M
  CCCCCAGACC TGGGCTCAGC CGCACCCGTC GCTCGCCCCT TTTTCTTCCC TCCCTAGCTG
  CACACAGACA AGCACGTGAG CGGGGCAGCT CGTCCCAGCT GGGGCTCAGC TGACCTCCTC
  CTGATTGGCT GAGAGCAACG TGGGCTGGGG TGGGGCCTGG CCGCCTGCGT CCTTCACCAT
  TGGCTCTCCG GGAACCCGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss137890807	ENSMUSSNP4462954	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47637915					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:73954433 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4761	CpG island 4761	within coordinates
Hif1a	hypoxia inducible factor 1, alpha subunit	Intron
Rr467871	regulatory region 467871	within coordinates
Rr467872	regulatory region 467872	256 bp proximal
Rr467873	regulatory region 467873	311 bp proximal
Rr467874	regulatory region 467874	1555 bp proximal
Tssr113838	transcription start site region 113838	300 bp upstream
Tssr113839	transcription start site region 113839	315 bp upstream
Tssr113840	transcription start site region 113840	396 bp upstream
Tssr113841	transcription start site region 113841	501 bp upstream
Tssr113842	transcription start site region 113842	526 bp upstream
Tssr113843	transcription start site region 113843	716 bp upstream
Tssr113844	transcription start site region 113844	1953 bp upstream