rs47638182 SNP Detail

Summary

• ID
  rs47638182
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172301160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAA ACATGTAACA TAAAGCGAAC
  Y
  ATCCATCACT CTACACCAAG AGTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120011334	PARCsnp_1.19745	PARC_SEQ	INBRED	f	SNP		T	C
ss120014406	PARCsnp_1.09775	PARC_SEQ	INBRED	f	SNP		T	C
ss146193176	ENSMUSSNP742732	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320125583	CHEV_1_174403724	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs47638182					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172301160 () rs orientation: forward

Symbol	Name	Function Class
Gm7804	predicted gene 7804	430 bp upstream
Gm70809	predicted gene, 70809	within coordinates
Gm70814	predicted gene, 70814	389 bp downstream
Rr396588	regulatory region 396588	255 bp downstream
Rr423578	regulatory region 423578	1473 bp proximal
Slamf9	SLAM family member 9	1767 bp upstream
Tssr10198	transcription start site region 10198	1778 bp upstream
Tssr10199	transcription start site region 10199	1794 bp upstream
Tssr10200	transcription start site region 10200	1834 bp upstream
Tssr15219	transcription start site region 15219	1572 bp downstream