rs47638945 SNP Detail

Summary

• ID
  rs47638945
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19596426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTGTCTT TATATGTTGT
  GTGTGGCTCT CTGCATGAGT GTGCAGGTAC CCATGAAGGC CAGGGGTGTT TGGTCCTCTG
  GAGTAACAGG TGGTTGTGAG CCTCCCAGTT AGGGTTCTGG GAACAGAACT CAGGCCCTCT
  GCAAGAGCAT CCACCCACTA AACAGCTTTT TTTGACACAA GGTCTTACTA CACAGCTTCC
  R
  TGGTCCATAG CTCATTCACA TGGGTTGCTG GGAATCAAAC CTGGGTCCTT TGGAAAAGCA
  GCCAATGAAT GCTCTAACTG TTGAGCAATC TCTCCAGTCC TCTCTCTTCT CTTCAACAAG
  AATTTGCATA GCATTTGCAT AACAGCCATC TAGGTGACTA GAAGTACAAG GATGCTCAGA
  ATGTCAGAAG GTTTGTTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148485976	ENSMUSSNP2203084	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47638945					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19596426 () rs orientation: forward

Symbol	Name	Function Class
Ceacam16	CEA cell adhesion molecule 16	1202 bp upstream
Gm44659	predicted gene 44659	within coordinates
Rr643320	regulatory region 643320	1695 bp proximal
Tssr71042	transcription start site region 71042	1276 bp upstream
Tssr71043	transcription start site region 71043	1259 bp upstream
Tssr71044	transcription start site region 71044	1202 bp upstream