rs47640052 SNP Detail

Summary

• ID
  rs47640052
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122037125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAATTTCTTT GCACATTTGT GGTTTTACTA CATGTTTGTA
  CTTTCCTAAT GGGTAGTTTA ATTTTGTTTA TTAATTAGTT TGTGTGAATA GACTCAGAGC
  K
  TATACTTTTC CATGTATCCC CGCCACCCCT TAGTTCTGTT TGTTGGTCCT TCCCAGGAGA
  GGGTTAAGGC TCCTGAAAAC AAAGCTTACA GTGTACCCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135737734	ENSMUSSNP2160732	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss320909874	CHEV_3_121946394	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47640052					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122037125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	1741 bp proximal
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	within coordinates
Rr375675	regulatory region 375675	within coordinates
Rr397979	regulatory region 397979	1723 bp upstream
Rr584261	regulatory region 584261	362 bp distal
Rr584262	regulatory region 584262	within coordinates
Rr584263	regulatory region 584263	257 bp distal
Rr584264	regulatory region 584264	377 bp proximal
Rr584265	regulatory region 584265	1266 bp proximal
Rr584266	regulatory region 584266	1864 bp proximal
Rr584267	regulatory region 584267	1997 bp proximal
Tssr31477	transcription start site region 31477	347 bp downstream
Tssr31478	transcription start site region 31478	2000 bp upstream
Tssr35443	transcription start site region 35443	1743 bp downstream
Tssr35444	transcription start site region 35444	1826 bp downstream