CTGGAGCTTA GAAGAATGTG GTAATGTGCA GGACTAGAAG GGAGGGAGCC CTGTTTCGAG GTTGCATCCA CACTTTTAAA CTCTCCTGAA GTCTCTATGA TAAGAGGAAT CTAACCGAAA CGATTGGCTT GCAAACATCT CGGCACTACT AAGTACAACA CACACAGGGC CATTCTATCA AAGCCTTGAG TTAGAGGTCC R CTCTGAGAAC CATGCTCTGC AGACCATGCT CTGAGGACCA CGCCCCGCTG TGAGAAAAAC AGAGCCGACC TCACACCTTG GTACCTCCCC GTCTTCAATA GATTAAAAAG GACTGCAGCA AGAGCTTGCA AGCCTCTCTC TCACTTCCTC TCTCTTGCTC AGGAGAACTG TGAGAACTAA CTGTTGATCT GAAAGCAACC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss61173174 | NES16687549 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs47640218 | SNP | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss61173174 | NES16687549 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr5:64645071 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm57288 | predicted gene, 57288 | 130 bp upstream | ||||||
Rr118672 | regulatory region 118672 | 1530 bp proximal | ||||||
Rr122953 | regulatory region 122953 | 1375 bp distal | ||||||
Rr129656 | regulatory region 129656 | 1931 bp proximal | ||||||
Rr131555 | regulatory region 131555 | 529 bp distal | ||||||
Rr367844 | regulatory region 367844 | 87 bp upstream | ||||||
Tssr46401 | transcription start site region 46401 | 124 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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