rs47640227 SNP Detail

Summary

• ID
  rs47640227
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70896851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCATCTA TCTCTCTGCC
  TTGCCTTGGC AACAGCATAC TACTATGTGG CTAGTCTTTG TAAGACTCTT GTGGATGAGA
  GATAAGAGGT AGAAAAGAAA TAAATGCCAT TCTCTCTTGC TCTGTCAAGG AGTCAACTAA
  TAAAACTAGC CTGCTCATTC TTGTGTTTCA TTTATGCTGT GTGCAATCAA GCACACTCAT
  Y
  GGACCTATGT ATCTTGGTTG CAAAAAGAGA TATTCAGCTA TGGATTTTCT AAGAGGTCAT
  GAGGGTACAA CACAGATAAT ACAAACGATT GAATATCAAG TACAGATGTG ACTTCATTTG
  TAGATCCCGG TTGAAAGACT TGAAGTTTGT CTATTTTAAG TATCTATCAG AATGTAAATT
  CTGTACTTGT AGAACTCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52652472	NES15473963	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		C	C	C	T		C
ss324416639	CHEV_13_70887610	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47640227					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52652472	NES15473963	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70896851 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Rr284828	regulatory region 284828	1708 bp distal
Tssr123156	transcription start site region 123156	1350 bp downstream