rs47641262 SNP Detail

Summary

• ID
  rs47641262
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:84565410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTAGGAA ACTGATGAAG
  AGGAGGAGGA GGTGGAGGAA GAAGAATCCA GTTCACAGGT GTTTGCAGCA AGCCTGGCTA
  AGCTGAGGCC TTGTCCTCTG AAGACCTGTA TCTGGTGGCC GTGCTGAATC AATGTTGAGG
  ATACAGTATC TTAGTCAGCC CTGCTATTTT CTTTCTTCAG GGTTTATATT TATTTATGTG
  Y
  ATGTGTGTAT CTTTATGAGA CTCTATCACA TATGCATGCA GGTACGTGTG AAGGCCAGAA
  GAGGGCGTTG GATCCCTTGG ATCTGGAGTT CCAGGCAGAT GTAAGGCATC TAGCATAGGT
  GCTGGAAAAC AAACTTGGGT TTTTCAGAAG AAGAGCTGGT GTTCTTCACG GCTGAGCTGT
  CGCTCTAGCC CCGGCCCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135427433	ENSMUSSNP1611039	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47641262					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:84565410 () rs orientation: forward

Symbol	Name	Function Class
Gm37240	predicted gene, 37240	within coordinates
Rr68542	regulatory region 68542	within coordinates
Rr68543	regulatory region 68543	791 bp proximal
Rr76452	regulatory region 76452	882 bp proximal
Rr83250	regulatory region 83250	1861 bp proximal