rs47641938 SNP Detail

Summary

• ID
  rs47641938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69912930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGAGGGTCT TGATAGTCCA TAGTGCCTAC TGGTGGAGAA
  GCAGGGCCTA TGTATTTTCT AGACTAAAAA AAAAAAAAAA AAAAAAAAAA TGAGTTCAAG
  Y
  CCGTTCTGCA TTGGTTCTTT CTGAGGATCC ATGCATTTTA TTTAGGTAGG AAACTAGGAC
  ATTGACGGGG TTTTATCTTG GGGGCTTACC TAACAGAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132364039	ENSMUSSNP6130421	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss323732623	CHEV_11_69835606	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47641938					SNP	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69912930 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3168	CpG island 3168	243 bp distal
Cpgi3169	CpG island 3169	1747 bp proximal
Dlg4	discs large MAGUK scaffold protein 4	within coordinates
Rr402685	regulatory region 402685	1009 bp downstream
Rr402686	regulatory region 402686	642 bp downstream
Rr450198	regulatory region 450198	1117 bp distal
Rr450199	regulatory region 450199	682 bp distal
Rr450200	regulatory region 450200	60 bp distal
Rr450201	regulatory region 450201	1421 bp proximal
Tssr102634	transcription start site region 102634	1818 bp upstream