rs47643339 SNP Detail

Summary

• ID
  rs47643339
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:107461489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAATATTAA TCATCATTTA CCTTAAGCCC ACAGATACAA
  ACTGAGCAGT GACTCAGATC AGAACACAGG ACTCACTCAC AGAAGTGGCT TTTGATCAAG
  K
  AAGGAGGTAT AATTAATGCA TAGAGCGCTG ATGCGCTGAG ACCCCAAATA GTTGAAGTGA
  CAGTTGTATG CTGGTCTATA TGATATATGA TTCAATTCTA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61045678	NES16080026	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	G	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47643339					SNP	T	T	T	T	T	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61045678	NES16080026	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:107461489 () rs orientation: forward

Symbol	Name	Function Class
Gm10156	predicted gene 10156	757 bp upstream
Or5p5c-ps1	olfactory receptor family 5 subfamily P member 5C, pseudogene 1	283 bp upstream
Rr652939	regulatory region 652939	609 bp proximal
Tssr68454	transcription start site region 68454	678 bp upstream