rs47643905 SNP Detail

Summary

• ID
  rs47643905
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18300729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTG ACTCCTATTT GGATATTCAC
  Y
  CTGTCAAGGT GGGTTCCATT GGGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148452171	ENSMUSSNP2323208	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss322115416	CHEV_7_19152153	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47643905					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18300729 () rs orientation: forward

Symbol	Name	Function Class
Psg27	pregnancy-specific beta-1-glycoprotein 27	within coordinates
Tssr2095	transcription start site region 2095	745 bp downstream
Tssr64739	transcription start site region 64739	1714 bp downstream
Tssr64740	transcription start site region 64740	1693 bp downstream
Tssr70834	transcription start site region 70834	387 bp downstream
Tssr70835	transcription start site region 70835	483 bp downstream
Tssr70836	transcription start site region 70836	514 bp downstream
Tssr70837	transcription start site region 70837	570 bp downstream
Tssr70838	transcription start site region 70838	714 bp downstream