rs47644294 SNP Detail

Summary

• ID
  rs47644294
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:82945984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAAACAG GGACCAAAGT
  GAACTCTAAG GAAAAACTGA AATAAAAATG AAATGTAAAT ACACCTGCCC AGGACATTTG
  GAGTTTGCAG GGTAAATGTT AAGTTCCCTA AATTGGCTCT GTTTTCTATC TATCTGGGTA
  CCCTTAAAGC CAGACAGGGA GGTTCACACC TGTAATCTCG GCACATAGGA GATTGAGGCA
  M
  GGCTAAACCA GCACGGGCTA TGTGGTTCCA GGCCAGGCTA GGTTACTGAG TCAAATCTTA
  TCTCAAAAAA GAGCCCAAAA TAAAGAAAAA AATTGTAATT GTCTTTAATC AAAATTTTAC
  CCAAATTTAC TAAATTTTCT CTGGGATTAG CGAATGTCAA AGTTGATGCT ATTCTGATGC
  CATGCTGAGA CAATCATAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60904299	NES15955700	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47644294					SNP	A	A	A	A	A	A	A	A	A	C	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904299	NES15955700	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:82945984 () rs orientation: forward

Symbol	Name	Function Class
D6UmiJ16	DNA segment, Chr 6, University of Michigan Jones 16	541 bp distal
M1ap	meiosis 1 associated protein	within coordinates
Rr632712	regulatory region 632712	351 bp proximal
Rr632713	regulatory region 632713	1937 bp proximal