rs47644761 SNP Detail

Summary

• ID
  rs47644761
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91052334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTGCCCA GACCCTCCTG
  CCGCCCCATG CTCACCCTAA AGAAACCTCG TGCCTTATAA TGATCCCCAC ATCTCTCTGC
  AGAGCCACTC TCAAGGGCGG TCAAAAAGTT TGCCTTGACC CTGAAGCCCC CCTGGTTCAG
  AAAATCATCC AAAAGATACT GAACAAGTGA GTCGCGATTT GTGCTTACAC CTGACTGGCA
  Y
  CCGATTTCTG AAAATTATAG CAGGGAAAAT CAAGGTTAAC TTCAGTTCAG GAACCTGAAT
  TATTATTTTC ATTGTTAACT TTGTCCTGTG AGCATCAGTT TGAATTGATA GAAGGGTACG
  ACTAGCTCCT TTCATCTACA CACGTAAAAG TCCTTCCTTA ATGGATGGTC GCTGTGTGTC
  CCTAAGAATT AAGTAGATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198264	NES16702728	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47644761					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198264	NES16702728	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91052334 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Gm73232	predicted gene, 73232	1271 bp upstream
Tssr47224	transcription start site region 47224	766 bp downstream
Tssr47225	transcription start site region 47225	664 bp downstream
Tssr47226	transcription start site region 47226	595 bp downstream
Tssr47227	transcription start site region 47227	401 bp downstream
Tssr47228	transcription start site region 47228	338 bp downstream
Tssr47229	transcription start site region 47229	317 bp downstream
Tssr47230	transcription start site region 47230	292 bp downstream
Tssr47231	transcription start site region 47231	262 bp downstream
Tssr47232	transcription start site region 47232	115 bp downstream
Tssr47233	transcription start site region 47233	65 bp downstream
Tssr47234	transcription start site region 47234	30 bp downstream
Tssr47235	transcription start site region 47235	713 bp upstream
Tssr47236	transcription start site region 47236	733 bp upstream
Tssr47237	transcription start site region 47237	782 bp upstream
Tssr47238	transcription start site region 47238	788 bp upstream
Tssr47239	transcription start site region 47239	848 bp upstream
Tssr47240	transcription start site region 47240	860 bp upstream
Tssr47241	transcription start site region 47241	875 bp upstream
Tssr47242	transcription start site region 47242	912 bp upstream
Tssr47243	transcription start site region 47243	935 bp upstream
Tssr47244	transcription start site region 47244	969 bp upstream
Tssr47245	transcription start site region 47245	989 bp upstream
Tssr47246	transcription start site region 47246	1040 bp upstream
Tssr47247	transcription start site region 47247	1084 bp upstream
Tssr47248	transcription start site region 47248	1147 bp upstream
Tssr47249	transcription start site region 47249	1217 bp upstream
Tssr47250	transcription start site region 47250	1355 bp upstream
Tssr47251	transcription start site region 47251	1419 bp upstream
Tssr47252	transcription start site region 47252	1471 bp upstream
Tssr51810	transcription start site region 51810	1332 bp upstream
Tssr51811	transcription start site region 51811	1278 bp upstream
Tssr51812	transcription start site region 51812	248 bp upstream
Tssr51813	transcription start site region 51813	231 bp upstream
Tssr51814	transcription start site region 51814	732 bp downstream
Tssr51815	transcription start site region 51815	766 bp downstream
Tssr51816	transcription start site region 51816	800 bp downstream