rs47646180 SNP Detail

Summary

• ID
  rs47646180
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64607560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCGAGAAA AGGACATTTA
  TAAAGATCTG GCCACTCGGC CATGATCCTA TCATTCGTTG TCCCAAGAGA GACTGTACGG
  TGAACTAGAA GGGCAATGCG CTGTCTGAAA TGGGCCCTTT ACAAAGCAGG CACAACCCAA
  CACTTACTAC TTTCGGGCTC AAGGATCCTG CTATTCTATC CCAGGATCCC CGCCCCCCCC
  H
  CCCCCGTTAC TGGTGCTTTG TGGTAAAAGT ATAGGAGATG CAGAGGACAG CTCCATTCCT
  TGAATGCTTA GTGTTTTAAA AATTAAGGCA GAGAAGGATG CCTGTGATCA TTTGTGTGTA
  GGAATAAATG CACAGGAGAG ACAGGGTTGC CTGGTTTGCT GCTGGGGAGT GCTGCTTTTT
  AGGAACTGTG AGGACCCATC                                            
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	LP/J	PWK/PhJ	SPRET/EiJ	SWR/J	WSB/EiJ
ss388884011	MGP_WTSI_13_64561054	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	T	T	T	T	T	T	T	T	T	T	A	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	CZECHII/EiJ	JF1/MsJ	LP/J	PWK/PhJ	SPRET/EiJ	SWR/J	WSB/EiJ
rs47646180					SNP	C	C	T	T	T	T	T	T	T	T	T	T	A	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388884011	MGP_WTSI_13_64561054	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64607560 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5782	CpG island 5782	1874 bp distal
Cpgi5783	CpG island 5783	725 bp distal
Gm7712	predicted gene 7712	958 bp upstream
Gm31218	predicted gene, 31218	within coordinates