rs47646328 SNP Detail

Summary

• ID
  rs47646328
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170825618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCA GAGAAAAAAA TCAGGGAACC
  G
  CAGGGATGGG CTGGGATCCC TTTCG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146150333	ENSMUSSNP2287909	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320115474	CHEV_1_172928180	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47646328					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170825618 () rs orientation: forward

Symbol	Name	Function Class
Rr396544	regulatory region 396544	56 bp downstream
Rr396545	regulatory region 396545	382 bp upstream
Rr423178	regulatory region 423178	993 bp distal
Rr423179	regulatory region 423179	1076 bp distal
Rr423180	regulatory region 423180	within coordinates
Tssr9941	transcription start site region 9941	516 bp upstream