rs47646548 SNP Detail

Summary

• ID
  rs47646548
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34887778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCGCCAG CTCCCTTCCC
  ATTTCAGCCT GTTCTTGCTT CACTGTTCCC CCTTGGCCTC CAGAAGATGA AGGCTGAGGA
  GGAGGGTGGA AGTCAACTGC GCTAACCAAG AAACAGAACT CAACCACTGT CCCAGCCCAG
  GGCACTGGGT GCTCTCCCAG GGGGCCAGGC TTAAGAAGCT CAAAAGTTCC ATCAGTCAAG
  R
  CACCAGGCCA GGCAGGGGAC AGAACCAGAC AGCGGGGGAT TGTCCTAAAC TAGGTGACTG
  GGGAGGAGGC CAGATCTGCT CTGCTCTCTC CTTCTGATGC CCCAAGGGTT CAGCTCCTTC
  CCCTTGCAGG GCTTTGGGGA CCACTTCTCA CTCAGCACAA CTCTCAGACC TGGGTTCCTC
  TTCACCTGCT TCTCCTCCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss60993770	NES16130703	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs47646548					SNP	A	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60993770	NES16130703	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34887778 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18861	CpG island 18861	1558 bp distal
Rr645331	regulatory region 645331	1958 bp distal
Slc7a10	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	within coordinates
Tssr65893	transcription start site region 65893	1984 bp downstream
Tssr65894	transcription start site region 65894	1945 bp downstream
Tssr65895	transcription start site region 65895	1921 bp downstream