rs47646622 SNP Detail

Summary

• ID
  rs47646622
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:34725179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAAACTT GCTTATTCTT
  TACACTTTTA AGCAATGGGA AATCTGGAGA GCTCTAGTAA CTGGCACCTG GCATCATATC
  TTTTTTATCT ATGGGCTTGG CTCTATGTCT TTTATCGTGG TTTACTGTGT TGAATCTTTG
  CCCTCTGTAG ATGAAGGTGC CGAAGTGACA CATTCCAAAA GTGAATCGGA AACTCCAGTC
  R
  GTAACATTCC CGTTTTGTTT TTCTTTATAT AACAAAACGT CTGAGAAGGT TTTCACTATT
  CAGTTTCATC ATCATCGTTA TTATTTAGCT TTTTGAGACA GGGTCTCTAT GTAGCCCTGA
  CTGTCTTGGA ACTCTCCCTG CAGACCGGAC AAGCGATGAA CTCACAGAGA TCCTCCAGCC
  TCTGCCTCGG GAGTGCTGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63335190	NES17512775	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47646622					SNP	A	A	A	A	A	A	G	A	A	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63335190	NES17512775	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:34725179 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2724	CpG island 2724	337 bp distal
Gm57348	predicted gene, 57348	within coordinates
Rr402479	regulatory region 402479	546 bp downstream
Rr444978	regulatory region 444978	722 bp distal
Rr444979	regulatory region 444979	638 bp distal
Rr444980	regulatory region 444980	19 bp distal
Rr444981	regulatory region 444981	1466 bp proximal
Rr444982	regulatory region 444982	1870 bp proximal
Spdl1	spindle apparatus coiled-coil protein 1	711 bp upstream
Tssr100930	transcription start site region 100930	580 bp downstream
Tssr100931	transcription start site region 100931	561 bp downstream
Tssr107398	transcription start site region 107398	756 bp upstream
Tssr107399	transcription start site region 107399	726 bp upstream
Tssr107400	transcription start site region 107400	689 bp upstream