rs47647582 SNP Detail

Summary

• ID
  rs47647582
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:158797790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTAAAAA ATTTAGGATA
  AAAAGGGTAA AAATAAGATG TGCTCTATGG GATTTTGGAA GATACAACTC TCCCTTTTTT
  GTTTTATTTT GTTTTATTTA ACAAACTTTT TAAAATACCA TTTTTTAAAA GCCCATTCCA
  TAATGCCTTG TCCCACGGGA TTACAGGGAA TCCCAGTTTT CTGTTGGATG CCAAACTCCC
  R
  GAAAAATCCT TCATTTTTTT TTTTTTTCTG TATCTGCTGG ACCATTGTCT GTTTTAATTA
  CTTTTGTTAG TCCCATAATA TTAAAAGCCT GTAAGCAATG ATCTATTACT TTCTGAAAGG
  CCTCTCCGGT ATGTAAGAAG GCAAAAAGAA ACCGTGAGCA TGTGTCAATG CAAACATGCA
  CATATTTTTG TTTTCCAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145854634	ENSMUSSNP2970619	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47647582					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:158797790 () rs orientation: forward

Symbol	Name	Function Class
1600012P17Rik	RIKEN cDNA 1600012P17 gene	within coordinates
Rr25255	regulatory region 25255	1429 bp distal
Tssr9608	transcription start site region 9608	385 bp downstream
Tssr14503	transcription start site region 14503	1738 bp upstream
Tssr14504	transcription start site region 14504	1388 bp upstream
Tssr14505	transcription start site region 14505	703 bp upstream
Tssr14506	transcription start site region 14506	524 bp upstream
Tssr14507	transcription start site region 14507	513 bp upstream
Tssr14508	transcription start site region 14508	471 bp upstream