rs47647671 SNP Detail

Summary

• ID
  rs47647671
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127272242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTTTCTC TGTATAGCCC
  TGGTTGTCCT GGAACTCACT TTGTAGATTC AGAAATCCGC CTGCCTCTGC CTACCAAGTG
  CTGGGATTAA AGGTGTGTGC CACCACGCCC GGCCTGGAAC TATTCTTTAA GACCCTAAAG
  AAAATGGTGA GAAGCCCATG TCTGTTATGA AGAAGAGTTG GGATTGCAAA TGTATCAGGG
  Y
  GGCTAACTTG TCTTCAAATG CCTTTACATG CCCTTAACTC AGTTCTTCAC AGGGCACTTC
  CTCTCACTAC TAGTCACTCC AAATATTGCA AAAGGAAAGG ATTCCCAGGT GTGTCTAGCC
  TGTGGCTCAA CAGCCACATG TGTTCCAGAT CCGAACATGG CAGCATCTAG GCAGACATGG
  GCCTGGAGGA GCCAAGAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61079345	NES16587490	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	T	C	C	C	C		C	C	C	C		C
ss135864378	ENSMUSSNP4873404	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
ss320954470	CHEV_3_127181511	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47647671					SNP	T	T	T	C	T	C	T	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61079345	NES16587490	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127272242 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42525	predicted gene 42525	1586 bp downstream
Gm43355	predicted gene 43355	842 bp downstream