rs47647857 SNP Detail

Summary

• ID
  rs47647857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:124674228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAAATTA GAAGTGAGTA
  CACCTCTGCC TCTGAGGTCA GTACTGTGAA GGGTTCTTCT TAAACAATAA AGTGAAAGCC
  AGGCACAGAG AGGAGGCAGA TCTCTGTGAT ATCTGCCTGA GGTTAGCCTG GTCTACACAG
  TAAGTTCCAG AACCCTGTCT CAAAAAACAA GCAAACAAAA ACAAGGGTCC CACGTGTGCT
  Y
  TCAGCATCAC AGTTACTCTC TGAATTATCA CAAGACTTGT AGGTTCATAC ATTTTAATCA
  TAAGTCTCTG TTAGACTCAG TATTTCCTGT TTTCATGCAG AAAAAAATTC ACTTAAGATA
  CACACACACA CACACACACA CACACAAACA TACACACAAA CATACACACA CACACACACA
  CACACACACA CACACACATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145836465	ENSMUSSNP4908207	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47647857					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124674228 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21263	CpG island 21263	1253 bp proximal
Gm45890	predicted gene 45890	1301 bp upstream
Nup133	nucleoporin 133	Intron
Rr672577	regulatory region 672577	1211 bp proximal
Rr672578	regulatory region 672578	1766 bp proximal
Rr672579	regulatory region 672579	1786 bp proximal
Rr672580	regulatory region 672580	1954 bp proximal
Tssr80007	transcription start site region 80007	1921 bp upstream
Tssr80008	transcription start site region 80008	1957 bp upstream
Tssr83414	transcription start site region 83414	1712 bp downstream