rs47648006 SNP Detail

Summary

• ID
  rs47648006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:32713245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCCTGCT GAGCCAGCTC
  ACCAGCTCAC CATATCCAGG AAGAGACTTC TGAACCACGC TCATGCACCA GCCATCCTCG
  GGCCAGGAAC TCACTTCTAT CACCTCCCCG CAACTCCAGC TCTGCCTTCG TTGTTTCTTC
  TGTGTGTGAG GTTAGGGAGA ATGTTGCATG TGTGTGCTCA TGTGTATGTG AGGGGATGCA
  Y
  GCACAGATGG CACGTGTCCT CTTCAATAGA CCTCACTTTG TTTACTGGGC CGGGGCCTCT
  CAGTGATCCC AGAACTCACT GATTCTGCTA GTGCACTTAG CCACTCGCCC AGTCAGCCAG
  CCTCAACCTC CTGAGTGCTG GGGTCACAAG CAGGTCACCA TCCTGCCTGC CATCCCTGAA
  CGGCTGTGGG GACGTGACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146404861	ENSMUSSNP6178741	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47648006					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:32713245 () rs orientation: forward

Symbol	Name	Function Class
Rr42888	regulatory region 42888	1245 bp distal
Rr42889	regulatory region 42889	1156 bp proximal
Rr53804	regulatory region 53804	1471 bp distal
Rr61147	regulatory region 61147	within coordinates
Stxbp1	syntaxin binding protein 1	within coordinates
Tssr23565	transcription start site region 23565	33 bp upstream
Tssr23566	transcription start site region 23566	1725 bp downstream