rs47648290 SNP Detail

Summary

• ID
  rs47648290
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:15895964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGAGCTGCT GTGCTGGGGG TAGCATGAGC AACACAGACA
  CATGGAGTGC CTGAGAGCAG CACTAAAGGA TGAGCGAGCA CACTAATCTT ACCCTCCAGG
  C
  CCCACCAGCT CCTGTAGCCA CGGGCTCAAG CCAGCGCCTG TCAGTCTAGA ATGAAGAGAG
  CAGGAGAGCA CATGGTGGCG GGGGGGGGGG GGGCTGTCA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148378226	ENSMUSSNP2799190	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47648290					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:15895964 () rs orientation: forward

Symbol	Name	Function Class
Rr155078	regulatory region 155078	364 bp distal
Rr160786	regulatory region 160786	37 bp proximal
Rr164335	regulatory region 164335	1020 bp distal
Slc8a2	solute carrier family 8 (sodium/calcium exchanger), member 2	976 bp downstream
Tssr64587	transcription start site region 64587	1845 bp downstream
Tssr64588	transcription start site region 64588	1829 bp downstream