rs47648490 SNP Detail

Summary

• ID
  rs47648490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152355307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGAAAGA ATCAAGCCTA
  AATGGTTTCA GTTGAGCAGA TACGCCTCAG ATCTGAATAG GCAGTTTTCC AAAGAAGACA
  TATGAATGTC TGATAAATAT AAAGGGGTGT TCAGCTCATT AACATTGGAC TGAATGTAAA
  ATAAAACCAC AAGGTGCTAC CCCAGGAGAA TGCAACTTAC TAAGAAGTTC ACTGCAGGGA
  Y
  TGGAGAGATA GCTCAACAGT TAAGAGTACT GGCTGCTTGC TCTTCTAGAG GACCCAGGTT
  CGATTCCCAG AGCCCACAAA ATGGTTGAAA ACCATCTGTA ACTCCAGACT CAGGGACCTG
  ATGCTATCTT CTGGCCTCTG CAGGCACTGA ATACAGATGG TACACAGACA TGCATGAAAG
  CAAAACACTG TACCCATAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147966736	ENSMUSSNP4994169	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47648490					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152355307 () rs orientation: forward

Symbol	Name	Function Class
Defb26	defensin beta 26	1695 bp upstream
Tssr26832	transcription start site region 26832	1669 bp upstream
Tssr26833	transcription start site region 26833	1639 bp upstream
Tssr26834	transcription start site region 26834	1596 bp upstream
Tssr26835	transcription start site region 26835	1587 bp upstream