rs47648961 SNP Detail

Summary

• ID
  rs47648961
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105839750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACT CCATACGGTG AGGCCTGTGC
  W
  ACACAGCCGT TCCAATGTAA CCCTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135578665	ENSMUSSNP444904	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47648961					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105839750 () rs orientation: forward

Symbol	Name	Function Class
I830077J02Rik	RIKEN cDNA I830077J02 gene	within coordinates
Rr582817	regulatory region 582817	within coordinates
Rr582818	regulatory region 582818	220 bp proximal
Tssr34937	transcription start site region 34937	1157 bp upstream
Tssr34938	transcription start site region 34938	156 bp downstream
Tssr34939	transcription start site region 34939	191 bp downstream
Tssr34940	transcription start site region 34940	204 bp downstream
Tssr34941	transcription start site region 34941	231 bp downstream
Tssr34942	transcription start site region 34942	253 bp downstream