rs47650601 SNP Detail

Summary

• ID
  rs47650601
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34353794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGGACGTG GCAATTGGTG GATGCTTGAT ATGAGCAGAT
  GCTCACGATT AGCTGTAGTG TGCGCAGGAA AAGTCTACCA ATTTGGTTTC AGTTCAATTG
  G
  GAAAGGTGAG CAGGTTAGAG ACTCAGGATC CCCGGAGCAA AGACCAGAAG AGAGGAACGA
  AATACCGCAG AGGCAGGGCA TAGGCTGCTG CGGCTGCGC                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146937883	ENSMUSSNP4803340	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47650601					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34353794 () rs orientation: forward

Symbol	Name	Function Class
Apc	APC, WNT signaling pathway regulator	183 bp upstream
Cpgi9813	CpG island 9813	within coordinates
Rr370354	regulatory region 370354	51 bp upstream
Rr535610	regulatory region 535610	within coordinates
Rr535611	regulatory region 535611	176 bp proximal
Rr535612	regulatory region 535612	254 bp proximal
Rr535613	regulatory region 535613	607 bp proximal
Rr535614	regulatory region 535614	916 bp proximal
Rr535615	regulatory region 535615	1835 bp proximal
Tssr150444	transcription start site region 150444	149 bp upstream
Tssr150445	transcription start site region 150445	213 bp upstream
Tssr150446	transcription start site region 150446	237 bp upstream
Tssr150447	transcription start site region 150447	367 bp upstream
Tssr152786	transcription start site region 152786	892 bp downstream