rs47652284 SNP Detail

Summary

• ID
  rs47652284
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:66079552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGGGAGAA TCTGGTGGCG
  GGCGGAGGCG GCTGGTGCCG GGCGCGGGAT GGAGCGCGCG GGACATGGGG AAGCGCACGG
  GAGGCGGGCA GCGCAGAGAC AATGGCGCAC AGAAGCCGGG ATCCCCCGTA GGATGGCTCC
  AGGACTTACC CCGAGAAGAC ACACTTTGAG CTCCCGTATC GCCATCATGT GCTCTGGGTC
  S
  GGCCCGGCCG GGGCTCAGCA GCATCGTCCG GGCCACACCG CGCCCAGCCT GCGTCCTGCT
  GTCTCCCAGG ACTCTCGCCG GCCGCGGGGC GGAACCGCCA AGGCGGCTAT TTCTGGGCCT
  CGGCCTCCGC TGTCGGTCAC GTGCTGCCGG CCGGCTCCTC CCGTCACGTC TAGTCTAGCC
  TGGCCGCCGG GCTTCGGCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62850164	NES17384875	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47652284					SNP	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62850164	NES17384875	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:66079552 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9418	CpG island 9418	within coordinates
Rab31	RAB31, member RAS oncogene family	within coordinates
Rr529807	regulatory region 529807	within coordinates
Rr529808	regulatory region 529808	4 bp distal
Rr529809	regulatory region 529809	73 bp proximal
Rr529810	regulatory region 529810	1020 bp proximal
Rr529811	regulatory region 529811	1125 bp proximal
Rr529812	regulatory region 529812	1330 bp proximal
Tssr149074	transcription start site region 149074	78 bp downstream
Tssr149075	transcription start site region 149075	108 bp downstream
Tssr149076	transcription start site region 149076	129 bp downstream