rs47653977 SNP Detail

Summary

• ID
  rs47653977
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126572168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACTTCTA TTCTGTTAGG
  CTTAAAGGCA CTAGAATGAC CATGGTTTCT TAAGTGATTG GAACTCGTTC TGTGAATGAG
  TCTGTGGTTG CCAAATTAGA TTAGATGCAT CATAGCAGAC ATTCCTGATA TCTCAGTACT
  TTGGAAGTGA AAGTTCTAAA GGAGGAGAAT CAATTCTTGC CTACAGTTCA ATGTACTTGG
  K
  CCAAGTTACT AATTTATGGA ATTATGGGAA ATTATGTCGA TTAAATTAGA AAACAGAAAG
  CAAGTTGATC ACAAATTTTA GTTGTGAAAT TAAAATTTCA GAAGTGAACA AATTAAGCCT
  GATTAAAGAC ATTTAGCACA CTGATAAATA CCCAGGATTT CCTTTTCAAA CATGAAGTCA
  AAATAGAAGT TTCGTCAGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135841010	ENSMUSSNP1327335	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss320948041	CHEV_3_126481437	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs47653977					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126572168 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			1843 bp upstream
Tssr31580	transcription start site region 31580			1878 bp upstream
Tssr31581	transcription start site region 31581			1889 bp upstream