rs47654671 SNP Detail

Summary

• ID
  rs47654671
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:52329611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTTCTTTAAC CAGATGCCTA AATGTTGATG CTTGCCAGGA
  TTTCCCCCTT CGCTGTCTCC TCTTGAAGTT CCTGTTGAAG TCTGCACACA TAGCTTCTAC
  Y
  TACGTAAGCT AGACTCCCAG ACCCCAAAAG AACACAAAAG CTGTTTCCCT CTCTAGCCTA
  GTTTTCAGCT TTATAGCTTT ATTGTATTTC TACAATGGCT C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss134173592	ENSMUSSNP4577986	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs47654671					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:52329611 () rs orientation: forward

Symbol	Name	Function Class
Plac1	placental specific protein 1	642 bp upstream
Rr4265	regulatory region 4265	411 bp distal
Tssr163389	transcription start site region 163389	636 bp upstream
Tssr163390	transcription start site region 163390	627 bp upstream