rs47655544 SNP Detail

Summary

• ID
  rs47655544
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:89602379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAATTGAAA ATATCTGATA
  TGCAGGATGT CTGATATGTA ACCCCCAAGG GAGTTGCAAC CCACAGATTG AGAGCCACTT
  TTCTAGATAA ATTCCACATT AGCATTTGAT TTCACTACTG TCATAACCTT CTAGTTGGAG
  TGCTGGAATT CCGTGACTAC AGCATGAACC ATCAAATCTG GCTCTCAATG TTCCTATGAT
  W
  ATCAAAACTC CATTTAAAGT GGGTACCCAG ATTCTGTGGC AGTATTCAAA AATTTCATTG
  ATCACTTACT GTCAGTCACT AGAGAACTGC AATGGGGGCT AAAACTGAGT TCTCCATTTC
  GTGTTGATAA TTATAACAAA CAGATAGTGG GGGGGGACCC CATTGTTAAG TTAAAAGATC
  TCTTTATCTT CTTCCTATTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61194485	NES16707124	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47655544					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61194485	NES16707124	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:89602379 () rs orientation: forward

Symbol	Name	Function Class
Gc	vitamin D binding protein	Intron
Rr614258	regulatory region 614258	1097 bp proximal
Rr614259	regulatory region 614259	1194 bp proximal