rs47656682 SNP Detail

Summary

• ID
  rs47656682
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123621303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGTGGT GGTGGTGATT
  TAGATCTGCT GAGTGGCCTT GCTGAACAAA GCCCCCGAGC AGACAAAGGC TCAGGAGAAC
  AGCACAACAA CTCTGGCCTC CCAAAGTCGC TGAGTGGAAG AAGCAGACCC CACTTATGGG
  GAAATTAACG AATGGGGGCA TCTTTGACAT GATGACCCTG TAGTGTTTTT CTCCTAGGAC
  Y
  ACCCAAGGCT TCACAAAGTG GCCAGGGCAG TGGCCCTTGG CCTACAATCT TGGCTGTTGA
  AGAGTAGATA TACTATCAAG ACCACGTCTG GCCTGAAAAA TACCACACAG TAGATTGTTA
  CCAGCTGTGA TCCCAGGTGT GGTTAATGGT GTCACTTTGG ATGAAAAGGC TGAGTCTTGT
  ACCTTGTTCT TAGGGGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss61241402	NES16861466	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs47656682					SNP	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61241402	NES16861466	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123621303 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	within coordinates
Tssr92157	transcription start site region 92157	172 bp upstream
Tssr92158	transcription start site region 92158	166 bp upstream
Tssr92159	transcription start site region 92159	142 bp upstream
Tssr92160	transcription start site region 92160	232 bp downstream
Tssr92161	transcription start site region 92161	249 bp downstream