rs47657620 SNP Detail

Summary

• ID
  rs47657620
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172027598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AGCCCAGCTA ACGTAGACTG TGTTCTTTTG CTTAACATGT
  TCTCTGGGTT CTACCTTAGA CATACCATTT GCTTTTGGAG GCAGTCTATT ATCAGCAACT
  T
  GGGGGGGGGG GCTCTCTCCT TCCAAGGTGA GCCCTGGGCC CTCTTGTTAG GCATACATGG
  CAAATCCTTT TACCTGCTAT CCTGCCAGCA CTTGGGGCCA T                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146183720	ENSMUSSNP2655533	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47657620					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172027598 () rs orientation: forward

Symbol	Name	Function Class
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr28998	regulatory region 28998	402 bp proximal
Tssr10176	transcription start site region 10176	1795 bp downstream
Tssr10177	transcription start site region 10177	1406 bp downstream
Tssr10178	transcription start site region 10178	1360 bp downstream
Tssr15152	transcription start site region 15152	1970 bp upstream
Tssr15153	transcription start site region 15153	1952 bp upstream
Tssr15154	transcription start site region 15154	1829 bp upstream
Tssr15155	transcription start site region 15155	1688 bp upstream
Tssr15156	transcription start site region 15156	1515 bp upstream
Tssr15157	transcription start site region 15157	1472 bp upstream
Tssr15158	transcription start site region 15158	863 bp upstream
Tssr15159	transcription start site region 15159	824 bp upstream
Tssr15160	transcription start site region 15160	782 bp upstream
Tssr15161	transcription start site region 15161	453 bp downstream
Tssr15162	transcription start site region 15162	510 bp downstream
Tssr15163	transcription start site region 15163	526 bp downstream