rs47657997 SNP Detail

Summary

• ID
  rs47657997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:44659728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAAAGTG CGAGCGCTCC
  CTCACGGTTT ATCAAGCTGC CTTAACCCAA GTTTCAACTC CAGCTGATTT TTCAGCCCTT
  CTGGAATTTA TCTCCTCTCT GACAACTTTC TGTCAATGCA TGCCCTCTGG TCCAACCAAG
  GTTTTGTTTC CTGGGTCTCT CCTGCAGATA TTCACCTGGA ATGCCCTCTT CTAGTCTGCA
  Y
  GACTTCTTTC TGCCTTCTTT CAAGTCCTGA CATACGCCCC ACCTTCTTCA CACAGATTAT
  AACAATTACA TTAACCTACA TCTCCCACAG TTGTCTGTCA TCTTCTGATC ACCAGCGTTT
  AACCCTTTCC TCGGTGGCCT GACATCACTG GCCTCCTTAT ACCTGCAGAG CTCTGGATTA
  GATACTCAAT GAGACCCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61784009	NES17519071	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47657997					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61784009	NES17519071	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:44659728 () rs orientation: forward

Symbol	Name	Function Class
Gm40930	predicted gene, 40930	within coordinates
Rr283665	regulatory region 283665	within coordinates
Rr283666	regulatory region 283666	476 bp proximal
Rr403740	regulatory region 403740	873 bp upstream