rs47658109 SNP Detail

Summary

• ID
  rs47658109
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84355463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCTCATT CCTTCATAGT
  GTAGAAATGA AAAATGTGCA CTATAACCTC ATCAGATTTC TTACAGGAAC CCAGGTTACG
  GCAGAGAGCC GCAGTGCCAG TCTCTAGGCT GTCTGCGGGG CGGCGTGGTG AGGGCTGTCT
  GCGGGGCGGC GTGGTGAGGG CTGTCTGCGG GGTGGCGTGG TGAGGGCTGT CTGCGGGGCG
  S
  CGTGGTGAGT TGCAGGCTGT GCCCTGACTT TGTCAGCTCT TACTAAATCA CGTCTAAGGA
  TAAAGAGGAC AGCATTGCCT GTTGATGAGC CCAGTTCTTC ATTCTGCTTT TCCTACAGTG
  CACTGAACAG CAGAGTAGAT GGTTTACATC GCAAATACAT AGTTACAATG AACAAAGACC
  AAACACAGGA GCCCGAAAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss397135837	MGP_WTSI_16_84558820	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	G	G	C	G	C	C	C	C	G	G	G	C	G	C	C	C	C	G	C	C	G	C	G	C	C	C	G	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs47658109					SNP	C	C	C	C	G	G	C	G	C	C	C	C	G	G	G	C	G	C	C	C	C	G	C	C	G	C	G	C	C	C	G	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397135837	MGP_WTSI_16_84558820	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84355463 () rs orientation: forward

Symbol	Name	Function Class
Gm32073	predicted gene, 32073	within coordinates
Rr404934	regulatory region 404934	1082 bp upstream
Rr518505	regulatory region 518505	222 bp distal
Rr518506	regulatory region 518506	within coordinates
Rr518507	regulatory region 518507	1070 bp proximal
Rr518508	regulatory region 518508	1201 bp proximal
Tssr139145	transcription start site region 139145	1407 bp downstream