rs47658270 SNP Detail

Summary

• ID
  rs47658270
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:135499959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AGGCAGTTCA TGTGCCCGGT TTGCGGCACT CTCAAAAGCA
  GTCTTAACAC ACTGGCATGA AGACCCTGAC CAGTGCAGTA TCAGCTTTCT CTGGCATCTT
  T
  ATTCTCTTTT TAACCTTGGT GGAAAAGCTG ATCTGGCTTA GTGAATGTTT CTGTAGGTTT
  TGTCACAGAC AGGCAGGCAG ACACTGCAGA AAAACCTTTT T                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147645881	ENSMUSSNP240789	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47658270					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:135499959 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12321	CpG island 12321	466 bp proximal
Gm75609	predicted gene, 75609	1297 bp upstream
Plcb4	phospholipase C, beta 4	972 bp upstream
Rr38677	regulatory region 38677	1759 bp distal
Rr55690	regulatory region 55690	41 bp proximal
Tssr20369	transcription start site region 20369	1120 bp upstream
Tssr20370	transcription start site region 20370	1254 bp upstream
Tssr20371	transcription start site region 20371	1501 bp upstream
Tssr20372	transcription start site region 20372	1554 bp upstream
Tssr20373	transcription start site region 20373	1586 bp upstream
Tssr20374	transcription start site region 20374	1646 bp upstream