rs47659326 SNP Detail

Summary

• ID
  rs47659326
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:63082748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCTAAGC ACAATGTAAA
  ATAATTTATC AGGTAATAAG CATTGGAAAC ATTTGGTCAG ATTTCATGGT GTTTTTCTGG
  ATGTTGTATT TAAAATTGGG TAGTAACACA TTTGAGGTGG AATTATTAGA TATTTTGCTC
  TCAGTTGTGA TAACCCAAAG CTCCTACAGG AAGGCAGTAA ATTCAGAGGA GAAAGCTGCC
  S
  TGCTGTTTGT CACAGTAACA CACTTAGGCG TTCCCTGTGG TAATCCTTGT TCTCTGTCAT
  CCCATTGTAG GAGGTGTTTA GTTGGTTGGT TGGTTTTCTT TTTGGTTTTT TTTGGGTTTT
  TTTTTTTTGT TTGTTTGTTT TTGGTGGTCT TGTTTTGAGA GATCAACATA GGTATAAACA
  CTCAGGCAAT TAATTGAAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52347380	NES15279462	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G		G	G	G	G		C
ss323333181	CHEV_10_62709717	CHEVERUD	SCREENING_POP	f	SNP										C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47659326					SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52347380	NES15279462	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:63082748 () rs orientation: forward

Symbol	Name	Function Class
Gm66860	predicted gene, 66860	542 bp downstream
Herc4	hect domain and RLD 4	within coordinates
Rr432768	regulatory region 432768	1850 bp distal
Rr432770	regulatory region 432770	544 bp proximal