rs47660674 SNP Detail

Summary

• ID
  rs47660674
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:27618965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTCCAGT GCTCTCTTCT
  GGCCTCGCAG ACACTGCACA CACATAATAC AGATATGCAT GGAGGCAAAA CACCCATATA
  CATACAAATA AATTATAAAA ATACAAAAGA CTGGTCAGTA TTTCTAAAGC ACAAGTAGTA
  TATTCAAAAT ATAAATAATC CAAGAAAGAA AAAAAAAAAG GAATCAAAAG ACACAAGCTT
  M
  AGTAGTAGGT AGAAGTTTAC CACTAGCTTA GGAACGGTCA AACAGAAACA GTGTCACATG
  GTTTCCCTTA CTGATAAGGA AAGACAGATG GAGTGCACTC TGTAAGCAGA GCCCACAGGG
  CGTACTGCAG TTCCAATACC TATCAGTCTC AGAGGCTAGT CTAGGAGTGC TAGTATACAA
  CAGAATGAAG TGAAGGCAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52540341	NES15611754	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47660674					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52540341	NES15611754	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:27618965 () rs orientation: forward

Symbol	Name	Function Class
Otulin	OTU deubiquitinase with linear linkage specificity	within coordinates
Rr500146	regulatory region 500146	within coordinates
Tssr133864	transcription start site region 133864	388 bp downstream