rs47662689 SNP Detail

Summary

• ID
  rs47662689
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64203484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCGA TAGAATCTTT GCTTCCCCTC
  R
  AAACTTCATG AGCCAGGCCC CCATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149158396	ENSMUSSNP5417049	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss324378675	CHEV_13_64156978	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47662689					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64203484 () rs orientation: forward

Symbol	Name	Function Class
Gm30999	predicted gene, 30999	569 bp upstream
Rr273309	regulatory region 273309	1917 bp proximal
Rr280021	regulatory region 280021	1302 bp distal
Rr388579	regulatory region 388579	632 bp downstream