rs47663907 SNP Detail

Summary

• ID
  rs47663907
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52203730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCGCGTGT GAGCACGGCC
  AGCAGAGCCC CTCACATAAA ATTAGACAAT AATTGAAGCC ATAAAAAAGC AGCCAAATCG
  CATTCTCACT CTACTGTATT TAAATCTATA TTTATGATAT TTCATAAGGA GTTATTGTTT
  CGGAAGCCAC ACAGGCTGGT GGAAAGTCAG GAGCGACCAA CAGATTCGTT TGCCTCGCTG
  Y
  GGCTCCCTGT AAAAATTTAT GAGGACTTGG AAAGGTTAAA TTAGACTGTT GTGTTTGGTT
  GGTGAATACC CTGTAAATAA TCCTTGCAGT CCTCAGAGAT GTGAGCCCCC CGCCCGCGCG
  CGCCCCCAGG GCCGGCCTAG AAAAGTCAAA TACAAGGCTC TCTCCACCTC AAACAGAGTG
  ACCACCGCCC CTGTCGCGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60886886	NES15970098	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47663907					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60886886	NES15970098	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52203730 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17431	CpG island 17431	371 bp distal
Gm57855	predicted gene, 57855	within coordinates
Gm68361	predicted gene, 68361	441 bp upstream
Hoxa9	homeobox A9	561 bp upstream
Rr146300	regulatory region 146300	within coordinates
Rr146301	regulatory region 146301	1670 bp proximal
Tssr61007	transcription start site region 61007	1519 bp upstream
Tssr61008	transcription start site region 61008	1494 bp upstream
Tssr61009	transcription start site region 61009	886 bp upstream
Tssr61010	transcription start site region 61010	794 bp upstream
Tssr61011	transcription start site region 61011	588 bp upstream
Tssr61012	transcription start site region 61012	554 bp upstream