rs47663949 SNP Detail

Summary

• ID
  rs47663949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:49342376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCC TCTGTGCCTG TCTCCAGCCT
  Y
  TCTTGTACAC AATGGTAGCA TCATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145726033	ENSMUSSNP2761726	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss325411068	CHEV_17_49174673	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47663949					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:49342376 () rs orientation: forward

Symbol	Name	Function Class
Lrfn2	leucine rich repeat and fibronectin type III domain containing 2	within coordinates
Rr331838	regulatory region 331838	576 bp distal
Rr337874	regulatory region 337874	1742 bp proximal
Rr341988	regulatory region 341988	977 bp distal
Rr392707	regulatory region 392707	653 bp downstream