rs47663979 SNP Detail

Summary

• ID
  rs47663979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127691717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGATGGT GGCTCACCAC
  CATGTGCAAT GGAATCCAAT GCCCTGTCCT GGTATGCAGG TATACATGCA ATAGAGCACT
  CAGATACATA AAATAAATAA ACCTTAAAAA AAGAAAAGAC TAGTACCCAA AATGTCTTTA
  GGCCCAGCCA AGGAATTAAA TAGGCAGGGA CTTACAGGCT TATTTTAAAA AGTGGTTTTG
  Y
  TTTGTTTGGG CTAGGCAGAA GCTTGTCCCT TTTGCTCACA CCTAACACAC ACACTCTCTC
  TCTCTCTGTG TACTCAGTGT CTCACAAAAA CACCCTTTCT TATACCCAGT CTGTTACACT
  TTGTAATGTA ACCTAGTTTC TTTCTTACAA CAGCATCTCA CAAATCCTTC TTAATGGTTT
  CTGCCAAACA TACACCGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135874556	ENSMUSSNP709631	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320958019	CHEV_3_127600986	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47663979					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127691717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	1545 bp distal
Fam241a	family with sequence similarity 241, member A	1745 bp upstream
Rr398009	regulatory region 398009	1495 bp downstream
Rr584897	regulatory region 584897	1254 bp distal
Tssr35608	transcription start site region 35608	1835 bp upstream
Tssr35609	transcription start site region 35609	1798 bp upstream
Tssr35610	transcription start site region 35610	1731 bp upstream