rs47664031 SNP Detail

Summary

• ID
  rs47664031
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48041310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGATGAAACG CTGTTTGTAG GACGGGTGTC AGCACAGTGA
  GACCTCGTTC ATTCACCCGC TGACCCTCAT TATGTGTCAG GGAAGCCATG AAGGACCCTT
  Y
  GGTTGTAGCC ATTTTCCTTC AGGAGCATAA GCTCTGCTGA GTTGAGAGGG GCAGGGCAGG
  GGCAGGGCAG GGGCAGGGAC AACACCATAA GTGCTGATC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325406555	CHEV_17_47867334	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47664031					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48041310 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	324 bp proximal
Tssr5147	transcription start site region 5147	1634 bp downstream
Tssr5148	transcription start site region 5148	1072 bp upstream
Tssr5149	transcription start site region 5149	1098 bp upstream
Tssr145004	transcription start site region 145004	1643 bp downstream
Tssr145005	transcription start site region 145005	1622 bp downstream
Tssr145006	transcription start site region 145006	1593 bp downstream
Tssr145007	transcription start site region 145007	1561 bp downstream
Tssr145008	transcription start site region 145008	1540 bp downstream
Tssr145009	transcription start site region 145009	1512 bp downstream
Tssr145010	transcription start site region 145010	1130 bp downstream
Tssr145011	transcription start site region 145011	1111 bp downstream
Tssr145012	transcription start site region 145012	1094 bp downstream
Tssr145013	transcription start site region 145013	1042 bp downstream
Tssr145014	transcription start site region 145014	248 bp downstream
Tssr145015	transcription start site region 145015	233 bp downstream
Tssr145016	transcription start site region 145016	229 bp downstream
Tssr145017	transcription start site region 145017	213 bp upstream
Tssr145018	transcription start site region 145018	225 bp upstream
Tssr145019	transcription start site region 145019	256 bp upstream
Tssr145020	transcription start site region 145020	277 bp upstream
Tssr145021	transcription start site region 145021	303 bp upstream
Tssr145022	transcription start site region 145022	335 bp upstream
Tssr145023	transcription start site region 145023	362 bp upstream
Tssr145024	transcription start site region 145024	473 bp upstream
Tssr145025	transcription start site region 145025	817 bp upstream
Tssr145026	transcription start site region 145026	1073 bp upstream
Tssr148459	transcription start site region 148459	1584 bp upstream
Tssr148460	transcription start site region 148460	1532 bp upstream
Tssr148461	transcription start site region 148461	1520 bp upstream
Tssr148462	transcription start site region 148462	1477 bp upstream
Tssr148463	transcription start site region 148463	1104 bp upstream
Tssr148464	transcription start site region 148464	1019 bp upstream
Tssr148465	transcription start site region 148465	258 bp upstream
Tssr148466	transcription start site region 148466	224 bp upstream
Tssr148467	transcription start site region 148467	244 bp downstream
Tssr148468	transcription start site region 148468	275 bp downstream
Tssr148469	transcription start site region 148469	365 bp downstream