rs47665423 SNP Detail

Summary

• ID
  rs47665423
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52316474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATAAAAG TCAGATGTAG
  TGGTAAATCA TGTAACCCCA CACTCAAGAG ACTGAGGCAA GGAGGATCTT GGGCAGACCT
  GGGCTACATG AGACTCCCCA AGCCAGGAGC AACAAAACAC AAGAAAGACC AAGTCTAAAC
  AAAACAAAAG CAAGGTCATT ACCACTTTCA AAAAGTACAA TGGTTTAGAC TAAAACATCT
  W
  TACTACAAAG AGAAGTCTCC CAATATATGC AAGAGCAATG GTGCCAATTA TATGACTTAT
  GGAATCCTTC ATCTGAATTT ATTTTTCTCA TTTTTTAAGC AGGTTAAACA TGAAAGGCTG
  GGGCTGGTGA GATGGCTCAG TGGGTAAGAG CACCCGACTG CTCTTCCAAA GGTCTGAAGT
  TCAAATCCCA GCAACCACAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52719786	NES15554363	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47665423					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52719786	NES15554363	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52316474 () rs orientation: forward

Symbol	Name	Function Class
Hnrnpc	heterogeneous nuclear ribonucleoprotein C	within coordinates
Rr289029	regulatory region 289029	127 bp proximal
Tssr128488	transcription start site region 128488	982 bp upstream
Tssr128489	transcription start site region 128489	509 bp downstream
Tssr128490	transcription start site region 128490	1176 bp downstream