rs47665990 SNP Detail

Summary

• ID
  rs47665990
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10958608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTATGGTT TTAAAATTAA
  GACTTAAGCA AGATCATTTC AGCACAAGGA GACTTAAGCT AATGGCAAAA AAGCACAGAA
  GAAAAAAGAC AGCAGACAGA GACAGGCTGC AGAGACAGTC AAGCTTTGGA GAAGGGAGTA
  AGCCCTGAAG CAGGCGTGTG AGCAGTGACT TACAGTGACT TCAGCATAGT CTGTTGGCAT
  R
  TGGATCTGCT TCCCGTTTTC TTTGCTACAG TGACTGGCTG TCTCATCACT TTTTTCAGTT
  TTTTGGTTCT TCAGCCAGAG TTCATAAAAT TGCTCTATAT CATGTACTGA AGAAAAAGGA
  ACCGTGTTCA GCAAACTACG AAATGCCATT CAAATCCACA TAAGCACATG GACTGCCTGC
  CTGTTGCTAC ACCTTCAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	PWD/PhJ
ss52594004	NES15689313	PERLEGEN	MM_PANEL2	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	PWD/PhJ
rs47665990					SNP	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52594004	NES15689313	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10958608 () rs orientation: forward

Symbol	Name	Function Class
D16Mit164	DNA segment, Chr 16, Massachusetts Institute of Technology 164	902 bp distal
Gm61125	predicted gene, 61125	within coordinates
Rr322718	regulatory region 322718	1900 bp proximal
Zc3h7a	zinc finger CCCH type containing 7 A	within coordinates