rs47667356 SNP Detail

Summary

• ID
  rs47667356
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:69195250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGTCAGGA TTCCATTATC
  CTGGCAATGT CTTTGCTGGA TAAATGTGTA AATATTTCAA ATAAGTATGA TGAGATGCTA
  TTTCTATTGA GGACTTCTCT ACAGGAGGAA AGATCATCCT CTTTGTAATT GTGGGAGTCC
  GTGTCACGGC GCATGCCATT CCTCCTTACC GATTTCATTT GAAATGGCCT GGAAATAACC
  G
  ATTACTTTAG ATGTAAGACT ATTTACCTTG GAGTCAGAAG TCTGGCGGGC AGGCTGGAGC
  TAATGGATTT GGTTGTTTTC AAAGCATTCT TATCTACAGC AAGATACTGT TTTAAAGTGA
  ATCCTCAGCT TGTCTATCAA GAGGCACTTG CACTGGGCAG AACACATGAA CATGTGCTCT
  GTAGTTGTAT TCTCCTCCTT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136600090	ENSMUSSNP3318586	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47667356					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69195250 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21987	CpG island 21987	1343 bp proximal
Rora	RAR-related orphan receptor alpha	Intron
Rr682144	regulatory region 682144	1224 bp proximal
Rr682145	regulatory region 682145	1725 bp proximal
Tssr85839	transcription start site region 85839	411 bp upstream
Tssr85840	transcription start site region 85840	1873 bp upstream
Tssr85841	transcription start site region 85841	1897 bp upstream
Tssr85842	transcription start site region 85842	1934 bp upstream
Tssr85843	transcription start site region 85843	1941 bp upstream