rs47667993 SNP Detail

Summary

• ID
  rs47667993
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84571908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTTTTCA AAGACACCGG
  GACGTGATCA GAATGCAAAA CTCTCTAAGT ATTCAAGATG CGAAGAGCCC AAGAAAGATG
  GCATCCGGGG TTGGCGAAGG CCACTCTTAA GTAGCTGCGG CTGAGGGATC AGTGGTTACG
  GTCCCAGCTG CCCCGGGCAA GGTGCTGGGT AAAGCACTTT AGAGGCGGTA GCGGGGTGAA
  R
  TTAGCTGAGC CCCAGTAGCT TTTCGCCTTT ACGCCTGCAA AACCGGCTTA GAGAAGTCTG
  TCCGCTCCAG CCAGCTGCCG TGTCCTCAGG GGATGTCCAG CCAGCGGGAC TGGCTGTTAG
  GATTGTTAGA AAGGCGCAGG CGATGAATGA GCGAGCTGGC AGCTGGCATA GCTGCGGAGG
  CGTCCCAAAG CCAGTTTAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60499944	NES16521735	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47667993					SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60499944	NES16521735	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84571908 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	within coordinates
Jam2	junction adhesion molecule 2	within coordinates
Tssr139178	transcription start site region 139178	1365 bp downstream
Tssr139179	transcription start site region 139179	1145 bp downstream
Tssr139180	transcription start site region 139180	1116 bp downstream
Tssr139181	transcription start site region 139181	927 bp downstream
Tssr139182	transcription start site region 139182	875 bp downstream
Tssr139183	transcription start site region 139183	846 bp downstream
Tssr139184	transcription start site region 139184	823 bp downstream
Tssr139185	transcription start site region 139185	782 bp downstream
Tssr139186	transcription start site region 139186	726 bp downstream
Tssr139187	transcription start site region 139187	706 bp downstream
Tssr139188	transcription start site region 139188	688 bp downstream
Tssr139189	transcription start site region 139189	597 bp downstream
Tssr139190	transcription start site region 139190	581 bp downstream