rs47668982 SNP Detail

Summary

• ID
  rs47668982
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141151315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGC CTCACCATCC GGGCGCGGCG
  Y
  CACCCCCACA CAGAACATGT CCAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147736139	ENSMUSSNP688240	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47668982					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141151315 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15228	CpG island 15228	1832 bp proximal
Gm70191	predicted gene, 70191	342 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr603759	regulatory region 603759	821 bp proximal
Rr603760	regulatory region 603760	1299 bp proximal
Tssr40062	transcription start site region 40062	1481 bp downstream
Tssr40063	transcription start site region 40063	within coordinates
Tssr40064	transcription start site region 40064	52 bp upstream
Tssr40065	transcription start site region 40065	67 bp upstream
Tssr40066	transcription start site region 40066	196 bp upstream
Tssr40067	transcription start site region 40067	244 bp upstream
Tssr40068	transcription start site region 40068	296 bp upstream
Tssr40069	transcription start site region 40069	428 bp upstream
Tssr40070	transcription start site region 40070	513 bp upstream
Tssr40071	transcription start site region 40071	537 bp upstream
Tssr40072	transcription start site region 40072	582 bp upstream
Tssr40073	transcription start site region 40073	605 bp upstream
Tssr40074	transcription start site region 40074	630 bp upstream
Tssr40075	transcription start site region 40075	643 bp upstream
Tssr40076	transcription start site region 40076	670 bp upstream
Tssr40077	transcription start site region 40077	689 bp upstream
Tssr44314	transcription start site region 44314	1365 bp upstream
Tssr44315	transcription start site region 44315	30 bp downstream
Tssr44316	transcription start site region 44316	113 bp downstream
Tssr44317	transcription start site region 44317	171 bp downstream
Tssr44318	transcription start site region 44318	554 bp downstream
Tssr44319	transcription start site region 44319	1564 bp downstream