rs47669030 SNP Detail

Summary

• ID
  rs47669030
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:58157811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGGGGCT CCTGCGAAGT
  GATACCAGAG AAGATGAGAT GAATCATACG GTGAGAAATG GACCGATTCT ACATATGATC
  TGAGAGTTGG TGAAGGGTTT CTTACAGCGT GTCAGCTGCG TCTCTTGAAT GACCTTGAGG
  CAGGTGGCCT ATGAGAAGTA ACTGTGGGAC ACAGAGTTAG TTCTGAGTCA GTGGAAGGAC
  Y
  GTGGTGACAG AACAGCGTTG AATGGGTCTG ATGACTGTGC ATCGTACAGA GGTAGACAAC
  AGGGAGGCAA GGGGAGAGCT GGCCAGCAGT GGTGAAGAAA ACAAGAGATA CAAAGTTAGC
  TTTTTGACCA AGAAAAAGCA ATCCAGAAAC TAGTGGGTGA GGAAAACACA CACCTGCTGA
  CACTCTCATT GGCCAGTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61405740	NES16787263	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47669030					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61405740	NES16787263	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58157811 () rs orientation: forward

Symbol	Name	Function Class
Pml	promyelocytic leukemia	742 bp upstream
Rr679902	regulatory region 679902	252 bp distal
Rr679903	regulatory region 679903	389 bp distal
Rr679904	regulatory region 679904	535 bp proximal
Rr679905	regulatory region 679905	859 bp proximal
Tssr89890	transcription start site region 89890	888 bp upstream
Tssr89891	transcription start site region 89891	856 bp upstream
Tssr89892	transcription start site region 89892	737 bp upstream